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ASM229018v1

Organism name:
Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BDGP2
BioSample:
SAMN07593867
BioProject:
PRJNA397225
Submitter:
Lawrence Berkeley National Laboratory
Date:
2017/09/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002290185.1 (latest)
RefSeq assembly accession:
GCF_002290185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 2015-11-10
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio

IDs: 1191561 [UID] 4997168 [GenBank] 5012318 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1248 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from BACT_11_A1; Susan Celniker, One Cyclotron Road, Berkeley, CA 94720.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/14/2023 01:47:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,490
CDSs (total)::3,384
Genes (coding)::3,309
CDSs (with protein)::3,309
Genes (RNA)::106
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::86
ncRNAs::4
Pseudo Genes (total)::75
CDSs (without protein)::75
Pseudo Genes (ambiguous residues)::0 of 75
Pseudo Genes (frameshifted)::48 of 75
Pseudo Genes (incomplete)::21 of 75
Pseudo Genes (internal stop)::25 of 75
Pseudo Genes (multiple problems)::16 of 75
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,581,586
Total ungapped length3,581,586
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002290195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023174.1=NZ_CP023174.1
Plasmid pLtBDGP2ACP023175.1=NZ_CP023175.1
Plasmid pLtBDGP2BCP023176.1=NZ_CP023176.1
Plasmid pLtBDGP2CCP023177.1=NZ_CP023177.1
Plasmid pLtBDGP2DCP023178.1=NZ_CP023178.1

Assembly statistics

MoleculeTotal
Length
All3,581,586
Chromosome 3,407,160
Plasmid pLtBDGP2A61,448
Plasmid pLtBDGP2B58,689
Plasmid pLtBDGP2C41,234
Plasmid pLtBDGP2D13,055

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarumLactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3685.7094.44
Best-match type99.3685.7094.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna