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ASM257683v1

Organism name:
Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: PC520
BioSample:
SAMN07760023
BioProject:
PRJNA413663
Submitter:
Northwest A&F University
Date:
2017/10/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002576835.1 (latest)
RefSeq assembly accession:
GCF_002576835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. V2
Expected final version:
yes
Genome coverage:
349.0x
Sequencing technology:
PacBio

IDs: 1341101 [UID] 5395908 [GenBank] 5442888 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1248 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/14/2023 01:44:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,321
CDSs (total)::3,222
Genes (coding)::3,162
CDSs (with protein)::3,162
Genes (RNA)::99
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::79
ncRNAs::4
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::37 of 60
Pseudo Genes (incomplete)::16 of 60
Pseudo Genes (internal stop)::20 of 60
Pseudo Genes (multiple problems)::11 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,452,904
Total ungapped length3,452,904
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002576855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023772.1=NZ_CP023772.1
Plasmid p1CP023773.1=NZ_CP023773.1
Plasmid p2CP023774.1=NZ_CP023774.1

Assembly statistics

MoleculeTotal
Length
All3,452,904
Chromosome 3,342,669
Plasmid p156,675
Plasmid p253,560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarumLactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3588.2693.77
Best-match type99.3588.2693.77

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna