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ASM284993v1

Organism name:
Lactobacillus helveticus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FAM8105
BioSample:
SAMN04892754
BioProject:
PRJNA319462
Submitter:
Agroscope
Date:
2018/01/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002849935.1 (latest)
RefSeq assembly accession:
GCF_002849935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Genome coverage:
511x
Sequencing technology:
PacBio

IDs: 1503981 [UID] 5827468 [GenBank] 5860158 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 207 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Agroscope Strain Collection, Dr. Noam Shani, Agroscope, Schwarzenburgstr. 161, 3097 Liebefeld, Switzerland

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/17/2024 08:39:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,341
CDSs (total)::2,265
Genes (coding)::1,978
CDSs (with protein)::1,978
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::287
CDSs (without protein)::287
Pseudo Genes (ambiguous residues)::0 of 287
Pseudo Genes (frameshifted)::181 of 287
Pseudo Genes (incomplete)::110 of 287
Pseudo Genes (internal stop)::75 of 287
Pseudo Genes (multiple problems)::75 of 287
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,255,245
Total ungapped length2,255,245
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002849945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015496.1=NZ_CP015496.1
Plasmid pFAM8105CP015497.1=NZ_CP015497.1

Assembly statistics

MoleculeTotal
Length
All2,255,245
Chromosome 2,209,387
Plasmid pFAM810545,858

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus helveticusLactobacillus helveticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029823695.1Lactobacillus helveticus DSM 20075 = CGMCC 1.1877type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029823695.1Lactobacillus helveticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1271.8486.49
Best-match type99.1271.8486.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna