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ASM285001v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BGM48
BioSample:
SAMN05412454
BioProject:
PRJNA329412
Submitter:
UC Davis
Date:
2018/01/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002850015.1 (latest)
RefSeq assembly accession:
GCF_002850015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP.2 v. HGAP.2
Genome coverage:
178
Sequencing technology:
PacBio

IDs: 1504021 [UID] 5827548 [GenBank] 5860778 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

There are 102 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source strain is available from the UC Davis Viticulture & Enology Culture Collection

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 03:42:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,422
CDSs (total)::3,321
Genes (coding)::3,255
CDSs (with protein)::3,255
Genes (RNA)::101
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::81
ncRNAs::4
Pseudo Genes (total)::68
CDSs (without protein)::66
Pseudo Genes (ambiguous residues)::0 of 68
Pseudo Genes (frameshifted)::28 of 68
Pseudo Genes (incomplete)::34 of 68
Pseudo Genes (internal stop)::16 of 68
Pseudo Genes (multiple problems)::10 of 68
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,676,811
Total ungapped length3,676,811
Total number of chromosomes and plasmids6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002850025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016491.1=NZ_CP016491.1
Plasmid pBGM48-1CP016492.1=NZ_CP016492.1
Plasmid pBGM48-2CP016493.1=NZ_CP016493.1
Plasmid pBGM48-3CP016494.1=NZ_CP016494.1
Plasmid pBGM48-4CP016495.1=NZ_CP016495.1
Plasmid pBGM48-5CP016496.1=NZ_CP016496.1

Assembly statistics

MoleculeTotal
Length
All3,676,811
Chromosome 3,591,251
Plasmid pBGM48-134,178
Plasmid pBGM48-218,164
Plasmid pBGM48-311,886
Plasmid pBGM48-410,962
Plasmid pBGM48-510,370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7782.4585.59
Best-match type97.7782.4585.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna