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Source database (GenBank or RefSeq) File type

ASM331691v1

Organism name:: Lactobacillus johnsonii (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: Byun-jo-01
BioSample:: SAMN08281023
BioProject:: PRJNA428092
Submitter:: Sungkyunkwan University
Date:: 2018/07/13
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003316915.1 (latest)
RefSeq assembly accession:: GCF_003316915.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 2.3.0
Expected final version:: yes
Genome coverage:: 635.0x
Sequencing technology:: PacBio; Illumina HiSeq

IDs: 1818001 [UID] 6860818 [GenBank] 6907778 [RefSeq]

See Genome Information for Lactobacillus johnsonii

Pathogen Detection Resources

There are 963 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003316915.1	=	GCF_003316915.1	ASM331691v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003316915.1-RS_2024_05_18
Annotation Date::05/18/2024 00:46:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,852
CDSs (total)::1,752
Genes (coding)::1,707
CDSs (with protein)::1,707
Genes (RNA)::100
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::3
Pseudo Genes (total)::45
CDSs (without protein)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::22 of 45
Pseudo Genes (incomplete)::15 of 45
Pseudo Genes (internal stop)::13 of 45
Pseudo Genes (multiple problems)::4 of 45
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,959,519
Total ungapped length	1,959,519
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	96.86	78.58	86.85
Best-match type	96.86	78.58	86.85

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ASM331691v1

See Genome Information for Lactobacillus johnsonii

Pathogen Detection Resources

There are 963 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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