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ASM333092v1

Organism name:
Propionibacterium freudenreichii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CB129slpB
BioSample:
SAMN09443940
BioProject:
PRJNA476583
Submitter:
UFMG
Date:
2018/07/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003330925.1 (latest)
RefSeq assembly accession:
GCF_003330925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
3.8x
Sequencing technology:
IonTorrent

IDs: 1825991 [UID] 6922238 [GenBank] 6936248 [RefSeq]

See Genome Information for Propionibacterium freudenreichii

There are 121 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from NA.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003330925.1-RS_2024_04_03
Annotation Date::04/03/2024 02:14:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,438
CDSs (total)::2,384
Genes (coding)::2,274
CDSs (with protein)::2,274
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::110
CDSs (without protein)::110
Pseudo Genes (ambiguous residues)::0 of 110
Pseudo Genes (frameshifted)::44 of 110
Pseudo Genes (incomplete)::73 of 110
Pseudo Genes (internal stop)::3 of 110
Pseudo Genes (multiple problems)::10 of 110
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,684,198
Total ungapped length2,684,198
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003330935.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP030279.1=NZ_CP030279.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,684,198

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Propionibacterium freudenreichiiPropionibacterium freudenreichii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000940845.1Propionibacterium freudenreichii subsp. freudenreichiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000940845.1Propionibacterium freudenreichiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9589.1190.28
Best-match type98.9589.1190.28

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna