Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM334537v1

Organism name:: Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: TMW 1.1478
BioSample:: SAMN07236647
BioProject:: PRJNA390483
Submitter:: Technische Universitaet Muenchen
Date:: 2018/07/30
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003345375.1 (latest)
RefSeq assembly accession:: GCF_003345375.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Celera Assembler v. 1
Genome coverage:: 213
Sequencing technology:: PacBio

IDs: 1836171 [UID] 6960848 [GenBank] 6972028 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1248 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003345375.1	=	GCF_003345375.1	ASM334537v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Source DNA or bacteria available from the culture collection of the Technische Mikrobiologie Weihenstephan upon request and only if permitted by a potential cooperation partner. Individual decisions
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information ... about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/14/2023 02:19:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,237
CDSs (total)::3,146
Genes (coding)::3,109
CDSs (with protein)::3,109
Genes (RNA)::91
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::71
ncRNAs::4
Pseudo Genes (total)::37
CDSs (without protein)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::26 of 37
Pseudo Genes (incomplete)::14 of 37
Pseudo Genes (internal stop)::10 of 37
Pseudo Genes (multiple problems)::11 of 37
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,387,168
Total ungapped length	3,387,168
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP021932.1	=	NZ_CP021932.1
Plasmid pL11478-1	CP021933.1	=	NZ_CP021933.1

Molecule	Total Length
All	3,387,168
Chromosome	3,326,107
Plasmid pL11478-1	61,061

	ANI	Query coverage	Subject coverage
Declared type	99.30	90.45	94.26
Best-match type	99.30	90.45	94.26

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM334537v1

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1248 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result