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ASM354593v1

Organism name:
Lactobacillus delbrueckii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TJA31
BioSample:
SAMN09604021
BioProject:
PRJNA479758
Submitter:
Max Rubner-Institut
Date:
2018/09/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003545935.1 (latest)
RefSeq assembly accession:
GCF_003545935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QNXB01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
no
Genome coverage:
101x
Sequencing technology:
Illumina MiSeq

IDs: 1967341 [UID] 7413658 [GenBank] 7432918 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/06/2018 13:35:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,861
CDS (total)::1,782
Genes (coding)::1,534
CDS (coding)::1,534
Genes (RNA)::79
rRNAs::2, 3, 5 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::3, 5 (16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::248
Pseudo Genes (ambiguous residues)::0 of 248
Pseudo Genes (frameshifted)::143 of 248
Pseudo Genes (incomplete)::94 of 248
Pseudo Genes (internal stop)::65 of 248
Pseudo Genes (multiple problems)::52 of 248
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,742,687
Total ungapped length1,742,687
Number of contigs54
Contig N50107,079
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,742,687541,742,687107,07900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckiiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000056065.1Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000056065.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0292.8686.77
Best-match type99.0292.8686.77

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna