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Source database (GenBank or RefSeq) File type

ASM354646v1

Organism name:: Burkholderia cepacia ATCC 25416 (b-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 25416
BioSample:: SAMN02795966
BioProject:: PRJNA244016
Submitter:: Los Alamos National Laboratory
Date:: 2014/09/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003546465.1 (latest)
RefSeq assembly accession:: GCF_003546465.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24
Genome coverage:: 280x
Sequencing technology:: Illumina; 454

IDs: 1967621 [UID] 7414208 [GenBank] 7432978 [RefSeq]

See Genome Information for Burkholderia cepacia

Pathogen Detection Resources

There are 324 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003546465.1	=	GCF_003546465.1	ASM354646v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 02:50:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,902
CDSs (total)::7,810
Genes (coding)::7,688
CDSs (with protein)::7,688
Genes (RNA)::92
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::0 of 122
Pseudo Genes (frameshifted)::47 of 122
Pseudo Genes (incomplete)::98 of 122
Pseudo Genes (internal stop)::20 of 122
Pseudo Genes (multiple problems)::36 of 122
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	8,567,011
Total ungapped length	8,567,011
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP007746.1	=	NZ_CP007746.1
Chromosome 2	CP007748.1	=	NZ_CP007748.1
Chromosome 3	CP007747.1	=	NZ_CP007747.1
Plasmid unnamed	CP007745.1	=	NZ_CP007745.1

Molecule	Total Length
All	8,567,011
Chromosome 1	3,779,447
Chromosome 2	3,396,456
Chromosome 3	1,187,985
Plasmid unnamed	203,123

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.96	99.50
Best-match type	99.98	99.96	99.50

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ASM354646v1

See Genome Information for Burkholderia cepacia

Pathogen Detection Resources

There are 324 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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