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ASM361097v1

Organism name:
Lactobacillus helveticus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LH99
BioSample:
SAMN05751674
BioProject:
PRJNA331038
Submitter:
Chinese National Human Genome Center at Shanghai
Date:
2018/10/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003610975.1 (latest)
RefSeq assembly accession:
GCF_003610975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. v.3
Genome coverage:
695.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 2004831 [UID] 7518718 [GenBank] 7536798 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 207 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Zhenmin Liu, Dairy Research Institute, Bright Dairy & Food Co., Ltd. Bldg.2, No.1518, West ... Jiangchang Road, Shanghai, China, 200436.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003610975.1-RS_2024_03_31
Annotation Date::03/31/2024 03:23:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,181
CDSs (total)::2,106
Genes (coding)::1,813
CDSs (with protein)::1,813
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::293
CDSs (without protein)::293
Pseudo Genes (ambiguous residues)::0 of 293
Pseudo Genes (frameshifted)::204 of 293
Pseudo Genes (incomplete)::90 of 293
Pseudo Genes (internal stop)::101 of 293
Pseudo Genes (multiple problems)::94 of 293
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,082,741
Total ungapped length2,082,741
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003610985.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017982.1=NZ_CP017982.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,082,741

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus helveticusLactobacillus helveticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015698225.1Lactobacillus helveticustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015698225.1Lactobacillus helveticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1080.9479.62
Best-match type99.1080.9479.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna