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ASM362737v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ZFM94
BioSample:
SAMN07302932
BioProject:
PRJNA392489
Submitter:
Zhejiang Gongshang University
Date:
2018/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003627375.1 (latest)
RefSeq assembly accession:
GCF_003627375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
GATK v. v1.6-13; Celera Assembler v. V8.3; SMRT Analysis v. v2.2.0
Expected final version:
no
Genome coverage:
46.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 2007431 [UID] 7549368 [GenBank] 7554938 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

There are 102 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Key Laboratory for Food Microbial Technology of Zhejiang Province.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 02:22:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,326
CDSs (total)::3,238
Genes (coding)::3,192
CDSs (with protein)::3,192
Genes (RNA)::88
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::15 of 47
Pseudo Genes (incomplete)::24 of 47
Pseudo Genes (internal stop)::16 of 47
Pseudo Genes (multiple problems)::8 of 47
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,687,169
Total ungapped length3,687,169
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003627385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP032659.1=NZ_CP032659.1
Plasmid unnamed1CP032660.1=NZ_CP032660.1
Plasmid unnamed2CP032661.1=NZ_CP032661.1
Plasmid unnamed3CP032662.1=NZ_CP032662.1

Assembly statistics

MoleculeTotal
Length
All3,687,169
Chromosome 3,564,833
Plasmid unnamed184,802
Plasmid unnamed227,706
Plasmid unnamed39,828

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1184.6988.16
Best-match type98.1184.6988.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna