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ASM375223v2

Organism name:
Lelliottia amnigena (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JUb66
BioSample:
SAMN10361116
BioProject:
PRJNA499495
Submitter:
DOE Joint Genome Institute
Date:
2021/02/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003752235.2 (latest)
RefSeq assembly accession:
GCF_003752235.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RJVC02
Assembly method:
SPAdes v. 3.11.0
Expected final version:
no
Genome coverage:
331.0x
Sequencing technology:
Illumina

IDs: 9298991 [UID] 25036268 [GenBank] 25063178 [RefSeq]

See Genome Information for Lelliottia amnigena

Pathogen Detection Resources

There are 33 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,572,787
Total ungapped length4,572,787
Number of contigs1
Contig N504,572,787
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,572,78714,572,7874,572,78700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lelliottia amnigenaLelliottia amnigena

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047465.1Lelliottia amnigenatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047465.1Lelliottia amnigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4691.2592.61
Best-match type98.4691.2592.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna