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ASM411475v1

Organism name:
Lactobacillus helveticus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: IDCC3801
BioSample:
SAMN10782597
BioProject:
PRJNA516087
Submitter:
Research Laboratories, Ildong Pharmaceutical
Date:
2019/01/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_004114755.1 (latest)
RefSeq assembly accession:
GCF_004114755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
6.0x
Sequencing technology:
Illumina HiSeq

IDs: 2220701 [UID] 8357458 [GenBank] 8374588 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 207 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_004114755.1-RS_2024_04_03
Annotation Date::04/03/2024 03:06:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,200
CDSs (total)::2,122
Genes (coding)::1,928
CDSs (with protein)::1,928
Genes (RNA)::78
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::63
ncRNAs::3
Pseudo Genes (total)::194
CDSs (without protein)::194
Pseudo Genes (ambiguous residues)::0 of 194
Pseudo Genes (frameshifted)::118 of 194
Pseudo Genes (incomplete)::76 of 194
Pseudo Genes (internal stop)::47 of 194
Pseudo Genes (multiple problems)::44 of 194
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,157,253
Total ungapped length2,157,253
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004114765.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP035307.1=NZ_CP035307.1
Plasmid pHel23910CP035308.1=NZ_CP035308.1

Assembly statistics

MoleculeTotal
Length
All2,157,253
Chromosome 2,133,343
Plasmid pHel2391023,910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus helveticusLactobacillus helveticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015698225.1Lactobacillus helveticustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015698225.1Lactobacillus helveticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3575.0876.50
Best-match type98.3575.0876.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna