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ASM435461v1

Organism name:
Lactobacillus delbrueckii subsp. jakobsenii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 26046
BioSample:
SAMN08555167
BioProject:
PRJNA434378
Submitter:
Carlsberg Research Laboratory
Date:
2019/03/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004354615.1 (latest)
RefSeq assembly accession:
GCF_004354615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PUFG01
Assembly method:
ABySS v. 2.0
Expected final version:
yes
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 2348281 [UID] 8758678 [GenBank] 8764558 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

Pathogen Detection Resources

There are 572 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,781,187
Total ungapped length1,780,814
Gaps between scaffolds0
Number of scaffolds69
Scaffold N5074,016
Scaffold L508
Number of contigs76
Contig N5073,143
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,781,187691,780,81474,01670

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. jakobseniiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001888925.1Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001888925.1Lactobacillus delbrueckiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.3493.51
Best-match type99.9899.3493.51

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna