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Source database (GenBank or RefSeq) File type

ASM588607v1

Organism name:: Lactobacillus paragasseri JV-V03 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: JV-V03
BioSample:: SAMN00001501
BioProject:: PRJNA543187
Submitter:: University of Technology Sydney
Date:: 2019/05/29
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_005886075.1 (latest)
RefSeq assembly accession:: GCF_005886075.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Morphoseq v. 1
Expected final version:: no
Genome coverage:: 30x
Sequencing technology:: Morphoseq

IDs: 3216511 [UID] 10741888 [GenBank] 10753568 [RefSeq]

See Genome Information for Lactobacillus paragasseri

Pathogen Detection Resources

There are 74 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005886075.1	=	GCF_005886075.1	ASM588607v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_005886075.1-RS_2024_03_28
Annotation Date::03/28/2024 04:50:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,002
CDSs (total)::1,927
Genes (coding)::1,882
CDSs (with protein)::1,882
Genes (RNA)::75
rRNAs::4, 5, 5 (5S, 16S, 23S)
complete rRNAs::4, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::45
CDSs (without protein)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::27 of 45
Pseudo Genes (incomplete)::14 of 45
Pseudo Genes (internal stop)::13 of 45
Pseudo Genes (multiple problems)::9 of 45
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,030,305
Total ungapped length	2,030,305
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP040500.1	=	NZ_CP040500.1
Plasmid unnamed1	CP040501.1	=	NZ_CP040501.1
Plasmid unnamed2	CP040502.1	=	NZ_CP040502.1

Molecule	Total Length
All	2,030,305
Chromosome	1,967,870
Plasmid unnamed1	41,709
Plasmid unnamed2	20,726

	ANI	Query coverage	Subject coverage
Declared type	98.53	87.28	91.45
Best-match type	98.53	87.28	91.45

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ASM588607v1

See Genome Information for Lactobacillus paragasseri

Pathogen Detection Resources

There are 74 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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