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ASM609431v1

Organism name:
Burkholderia cepacia ATCC 25416 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 25416
BioSample:
SAMN10591700
BioProject:
PRJNA509990
Submitter:
Zhejiang Tianke High Technology Development Co.Ltd.
Date:
2019/06/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006094315.1 (latest)
RefSeq assembly accession:
GCF_006094315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. Unicycler v0.4.5
Expected final version:
yes
Genome coverage:
79.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 3320801 [UID] 10959708 [GenBank] 11021038 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/18/2023 03:49:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,909
CDSs (total)::7,815
Genes (coding)::7,700
CDSs (with protein)::7,700
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::115
CDSs (without protein)::115
Pseudo Genes (ambiguous residues)::0 of 115
Pseudo Genes (frameshifted)::47 of 115
Pseudo Genes (incomplete)::92 of 115
Pseudo Genes (internal stop)::19 of 115
Pseudo Genes (multiple problems)::37 of 115
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,574,389
Total ungapped length8,574,389
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006094325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP034553.1=NZ_CP034553.1
Chromosome 2CP034554.1=NZ_CP034554.1
Chromosome 3CP034555.1=NZ_CP034555.1
Plasmid unnamed1CP034556.1=NZ_CP034556.1
Plasmid unnamed2CP034557.1=NZ_CP034557.1

Assembly statistics

MoleculeTotal
Length
All8,574,389
Chromosome 13,781,435
Chromosome 23,396,958
Chromosome 31,187,977
Plasmid unnamed1204,170
Plasmid unnamed23,849

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepacia ATCC 25416Burkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9499.57
Best-match type99.9999.9499.57

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna