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ASM674030v1

Organism name:
Lactobacillus delbrueckii subsp. delbrueckii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 3202
BioSample:
SAMD00093676
BioProject:
PRJDB5979
Submitter:
National Institute of Technology and Evaluation
Date:
2019/06/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006740305.1 (latest)
RefSeq assembly accession:
GCF_006740305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.4
Genome coverage:
510x
Sequencing technology:
Illumina MiSeq; ONT GridION

IDs: 3689421 [UID] 11803168 [GenBank] 11977898 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/20/2023 02:01:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,903
CDSs (total)::1,792
Genes (coding)::1,698
CDSs (with protein)::1,698
Genes (RNA)::111
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::3
Pseudo Genes (total)::94
CDSs (without protein)::94
Pseudo Genes (ambiguous residues)::0 of 94
Pseudo Genes (frameshifted)::48 of 94
Pseudo Genes (incomplete)::39 of 94
Pseudo Genes (internal stop)::26 of 94
Pseudo Genes (multiple problems)::18 of 94
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,910,306
Total ungapped length1,910,306
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006740315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP019750.1=NZ_AP019750.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,910,306

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. delbrueckiiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001888925.1Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001888925.1Lactobacillus delbrueckiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7987.7088.55
Best-match type98.7987.7088.55

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna