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Source database (GenBank or RefSeq) File type

ASM799085v1

Organism name:: Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: NBRC 3425
BioSample:: SAMD00169722
BioProject:: PRJDB423
Submitter:: National Institute of Technology and Evaluation
Date:: 2019/08/01
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_007990855.1 (latest)
RefSeq assembly accession:: GCF_007990855.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BJXF01
Assembly method:: newbler v. 3.0
Genome coverage:: 199x
Sequencing technology:: Illumina HiSeq 1000

IDs: 4335311 [UID] 13183548 [GenBank] 13210128 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 635 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007990855.1	=	GCF_007990855.1	ASM799085v1	Contig	Latest GenBank, Latest RefSeq

Comment

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes.

Annotated by ... DFAST v.1.2.0 (https://dfast.nig.ac.jp)  more

Global statistics

Total sequence length	2,909,187
Total ungapped length	2,909,187
Number of contigs	190
Contig N50	23,804
Contig L50	34
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	190

	ANI	Query coverage	Subject coverage
Declared type	99.97	99.94	99.07
Best-match type	99.97	99.94	99.07

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ASM799085v1

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 635 assemblies for this organism

History (Show revision history)

Comment

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