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ASM883142v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BIO6870
BioSample:
SAMN12856534
BioProject:
PRJNA574342
Submitter:
Bioprox
Date:
2019/10/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_008831425.1 (latest)
RefSeq assembly accession:
GCF_008831425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.5
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Miseq, Oxford Nanopore MinION

IDs: 4791111 [UID] 14240378 [GenBank] 14366638 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/13/2023 01:53:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,828
CDSs (total)::2,751
Genes (coding)::2,690
CDSs (with protein)::2,690
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::61
CDSs (without protein)::61
Pseudo Genes (ambiguous residues)::0 of 61
Pseudo Genes (frameshifted)::24 of 61
Pseudo Genes (incomplete)::34 of 61
Pseudo Genes (internal stop)::11 of 61
Pseudo Genes (multiple problems)::6 of 61
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,006,715
Total ungapped length3,006,715
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008831435.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP044506.1=NZ_CP044506.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,006,715

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5785.0985.61
Best-match type97.5785.0985.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna