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ASM883148v1

Organism name:
Lactobacillus acetotolerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LA749
BioSample:
SAMN12784818
BioProject:
PRJNA566216
Submitter:
Korea University
Date:
2019/10/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008831485.1 (latest)
RefSeq assembly accession:
GCF_008831485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio SMRT Analysis v. v2.3
Expected final version:
yes
Genome coverage:
504.71x
Sequencing technology:
PacBio

IDs: 4791141 [UID] 14240438 [GenBank] 14368758 [RefSeq]

See Genome Information for Lactobacillus acetotolerans

There are 39 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_008831485.1-RS_2024_03_28
Annotation Date::03/28/2024 05:22:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,662
CDSs (total)::1,587
Genes (coding)::1,544
CDSs (with protein)::1,544
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::24 of 43
Pseudo Genes (incomplete)::10 of 43
Pseudo Genes (internal stop)::11 of 43
Pseudo Genes (multiple problems)::2 of 43
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,683,905
Total ungapped length1,683,905
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008831495.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP044496.1=NZ_CP044496.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,683,905

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus acetotoleransLactobacillus acetotolerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001436775.1Lactobacillus acetotolerans DSM 20749 = JCM 3825type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001436775.1Lactobacillus acetotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9993.9899.87
Best-match type99.9993.9899.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna