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ASM958623v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BC16
BioSample:
SAMN12612766
BioProject:
PRJNA561256
Submitter:
School of Pharmacy and Life Sciences
Date:
2019/10/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009586235.1 (latest)
RefSeq assembly accession:
GCF_009586235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.7.11
Expected final version:
yes
Genome coverage:
410.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 5186771 [UID] 15121498 [GenBank] 15172478 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 06:59:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,637
CDSs (total)::7,545
Genes (coding)::7,426
CDSs (with protein)::7,426
Genes (RNA)::92
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::119
CDSs (without protein)::119
Pseudo Genes (ambiguous residues)::0 of 119
Pseudo Genes (frameshifted)::41 of 119
Pseudo Genes (incomplete)::92 of 119
Pseudo Genes (internal stop)::11 of 119
Pseudo Genes (multiple problems)::23 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,366,868
Total ungapped length8,366,868
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009586255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP045235.1=NZ_CP045235.1
Chromosome 2CP045236.1=NZ_CP045236.1
Chromosome 3CP045237.1=NZ_CP045237.1

Assembly statistics

MoleculeTotal
Length
All8,366,868
Chromosome 13,688,624
Chromosome 23,430,130
Chromosome 31,248,114

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9288.8286.35
Best-match type97.9288.8286.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna