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ASM1339408v1

Organism name:
Limosilactobacillus fermentum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20052
BioSample:
SAMN11893902
BioProject:
PRJNA545488
Submitter:
North Carolina State University
Date:
2020/07/08
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013394085.1 (latest)
RefSeq assembly accession:
GCF_013394085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.4
Expected final version:
yes
Reference guided assembly:
NZ_ACGI
Genome coverage:
125.0x
Sequencing technology:
PacBio; Illumina MiSeq

IDs: 7332191 [UID] 20287328 [GenBank] 20299948 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_013394085.1-RS_2024_03_30
Annotation Date::03/30/2024 04:35:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,901
CDSs (total)::1,827
Genes (coding)::1,745
CDSs (with protein)::1,745
Genes (RNA)::74
rRNAs::5, 4, 5 (5S, 16S, 23S)
complete rRNAs::5, 4, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::2
Pseudo Genes (total)::82
CDSs (without protein)::82
Pseudo Genes (ambiguous residues)::0 of 82
Pseudo Genes (frameshifted)::28 of 82
Pseudo Genes (incomplete)::35 of 82
Pseudo Genes (internal stop)::30 of 82
Pseudo Genes (multiple problems)::11 of 82
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,887,974
Total ungapped length1,885,974
Gaps between scaffolds0
Number of scaffolds1
Scaffold N501,887,974
Scaffold L501
Number of contigs21
Contig N50168,413
Contig L505
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013394095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP040910.1=NZ_CP040910.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1,887,97411,885,9741,887,974200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus fermentumLimosilactobacillus fermentum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.2698.24
Best-match type99.9899.2698.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna