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ASM1376108v1

Organism name:
Methanococcus maripaludis (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: C9
BioSample:
SAMN14908290
BioProject:
PRJNA632154
Submitter:
DOE Joint Genome Institute
Date:
2020/07/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_013761085.1 (latest)
RefSeq assembly accession:
GCF_013761085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACDUM01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
824.0x
Sequencing technology:
Illumina

IDs: 7587721 [UID] 20906318 [GenBank] 21389278 [RefSeq]

See Genome Information for Methanococcus maripaludis

Pathogen Detection Resources

There are 29 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,820,669
Total ungapped length1,820,380
Gaps between scaffolds0
Number of scaffolds9
Scaffold N50396,308
Scaffold L502
Number of contigs12
Contig N50396,308
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,820,66991,820,380396,30830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludisMethanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002945325.1Methanococcus maripaludissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002945325.1Methanococcus maripaludissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.8383.5088.63
Best-match type95.8383.5088.63

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna