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ASM1405868v1

Organism name:
Lactobacillus johnsonii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NCK2677
BioSample:
SAMN15520417
BioProject:
PRJNA645941
Submitter:
North Carolina State University
Date:
2020/08/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014058685.1 (latest)
RefSeq assembly accession:
GCF_014058685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. June-2019
Expected final version:
yes
Reference guided assembly:
GCA_000008065.1
Genome coverage:
326.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore

IDs: 7814721 [UID] 21402648 [GenBank] 21534908 [RefSeq]

See Genome Information for Lactobacillus johnsonii

There are 963 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Dr Barrangou. NCK culture collection NCK2677

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/22/2023 16:02:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,875
CDSs (total)::1,772
Genes (coding)::1,741
CDSs (with protein)::1,741
Genes (RNA)::103
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::3
Pseudo Genes (total)::31
CDSs (without protein)::31
Pseudo Genes (ambiguous residues)::0 of 31
Pseudo Genes (frameshifted)::15 of 31
Pseudo Genes (incomplete)::12 of 31
Pseudo Genes (internal stop)::4 of 31
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,951,416
Total ungapped length1,951,416
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014058695.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP059055.1=NZ_CP059055.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,951,416

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus johnsoniiLactobacillus johnsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000159355.1Lactobacillus johnsonii ATCC 33200type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000159355.1Lactobacillus johnsoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8178.1986.06
Best-match type96.8178.1986.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna