Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM1416995v1

Organism name:: Sphingomonas paucimobilis (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: Kira
BioSample:: SAMN15540814
BioProject:: PRJNA646346
Submitter:: Keio University
Date:: 2020/07/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_014169955.1 (latest)
RefSeq assembly accession:: GCF_014169955.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 2.0
Genome coverage:: 100x
Sequencing technology:: Illumina NextSeq 500; Oxford Nanopore Technologies GridION X5

IDs: 7867221 [UID] 21554708 [GenBank] 21580058 [RefSeq]

See Genome Information for Sphingomonas paucimobilis

Pathogen Detection Resources

There are 25 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014169955.1	=	GCF_014169955.1	ASM1416995v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Annotated at DFAST https://dfast.nig.ac.jp/


The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 02:20:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,807
CDSs (total)::3,739
Genes (coding)::3,639
CDSs (with protein)::3,639
Genes (RNA)::68
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::100
CDSs (without protein)::100
Pseudo Genes (ambiguous residues)::0 of 100
Pseudo Genes (frameshifted)::73 of 100
Pseudo Genes (incomplete)::29 of 100
Pseudo Genes (internal stop)::10 of 100
Pseudo Genes (multiple problems)::11 of 100
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,041,318
Total ungapped length	4,041,318
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP023323.1	=	NZ_AP023323.1
Plasmid pKira_1	AP023324.1	=	NZ_AP023324.1
Plasmid pKira_2	AP023325.1	=	NZ_AP023325.1

Molecule	Total Length
All	4,041,318
Chromosome	3,917,410
Plasmid pKira_1	79,575
Plasmid pKira_2	44,333

	ANI	Query coverage	Subject coverage
Declared type	99.76	93.05	86.63
Best-match type	99.76	93.05	86.63

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM1416995v1

See Genome Information for Sphingomonas paucimobilis

Pathogen Detection Resources

There are 25 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result