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ASM1485660v1

Organism name:
Thermoanaerobacterium thermosaccharolyticum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: A1
BioSample:
SAMN12647216
BioProject:
PRJNA562652
Submitter:
Biotechnical Faculty
Date:
2020/10/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_014856605.1 (latest)
RefSeq assembly accession:
GCF_014856605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWXZ01
Assembly method:
SKESA v. 2.4.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina NextSeq

IDs: 8228681 [UID] 22466568 [GenBank] 22476208 [RefSeq]

See Genome Information for Thermoanaerobacterium thermosaccharolyticum

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Masa Vodovnik

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/16/2019 17:43:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,826
CDSs (total)::2,752
Genes (coding)::2,594
CDSs (with protein)::2,594
Genes (RNA)::74
rRNAs::5, 3, 3 (5S, 16S, 23S)
complete rRNAs::5 (5S)
partial rRNAs::3, 3 (16S, 23S)
tRNAs::58
ncRNAs::5
Pseudo Genes (total)::158
CDSs (without protein)::158
Pseudo Genes (ambiguous residues)::0 of 158
Pseudo Genes (frameshifted)::69 of 158
Pseudo Genes (incomplete)::93 of 158
Pseudo Genes (internal stop)::29 of 158
Pseudo Genes (multiple problems)::29 of 158
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,719,453
Total ungapped length2,719,453
Number of contigs125
Contig N5045,759
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)125

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,719,4531252,719,45345,75900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoanaerobacterium thermosaccharolyticumThermoanaerobacterium thermosaccharolyticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000145615.1Thermoanaerobacterium thermosaccharolyticum DSM 571type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000145615.1Thermoanaerobacterium thermosaccharolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.7578.6276.75
Best-match type96.7578.6276.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna