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ASM1529182v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: YSJ17
BioSample:
SAMN09937248
BioProject:
PRJNA488594
Submitter:
Nanjing Agricultural University
Date:
2020/11/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015291825.1 (latest)
RefSeq assembly accession:
GCF_015291825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. V5.1.0
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq

IDs: 8443881 [UID] 22980138 [GenBank] 23055388 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Nanjing Agricultural University.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/11/2023 03:20:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,486
CDSs (total)::2,411
Genes (coding)::2,309
CDSs (with protein)::2,309
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::102
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::46 of 102
Pseudo Genes (incomplete)::55 of 102
Pseudo Genes (internal stop)::17 of 102
Pseudo Genes (multiple problems)::15 of 102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,555,265
Total ungapped length2,555,265
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015291835.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP032064.1=NZ_CP032064.1
Plasmid pYSJ17CP032065.1=NZ_CP032065.1

Assembly statistics

MoleculeTotal
Length
All2,555,265
Chromosome 2,551,200
Plasmid pYSJ174,065

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.7562.4880.45
Best-match type94.7562.4880.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna