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ASM1537778v1

Organism name:
Lactobacillus delbrueckii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: P3MRA
BioSample:
SAMN13106283
BioProject:
PRJNA579198
Submitter:
Zhejiang Tianke High Technology Development Co.Ltd.
Date:
2020/11/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015377785.1 (latest)
RefSeq assembly accession:
GCF_015377785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.5
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore GridION; Illumina HiSeq

IDs: 8489481 [UID] 23087378 [GenBank] 23157678 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/07/2024 03:10:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,996
CDSs (total)::1,871
Genes (coding)::1,719
CDSs (with protein)::1,719
Genes (RNA)::125
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::95
ncRNAs::3
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::89 of 152
Pseudo Genes (incomplete)::78 of 152
Pseudo Genes (internal stop)::38 of 152
Pseudo Genes (multiple problems)::49 of 152
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,871,250
Total ungapped length1,871,250
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015377795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP045604.1=NZ_CP045604.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,871,250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckiiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000056065.1Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000056065.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3092.6792.99
Best-match type99.3092.6792.99

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna