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ASM1570918v1

Organism name:
Lactobacillus helveticus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TK-J7A
BioSample:
SAMN13106277
BioProject:
PRJNA579198
Submitter:
Zhejiang Tianke High Technology Development Co.Ltd.
Date:
2020/11/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015709185.1 (latest)
RefSeq assembly accession:
GCF_015709185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.5
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore GridION; Illumina HiSeq

IDs: 8660861 [UID] 23485888 [GenBank] 23492778 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 207 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/02/2024 04:26:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,209
CDSs (total)::2,131
Genes (coding)::1,939
CDSs (with protein)::1,939
Genes (RNA)::78
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::63
ncRNAs::3
Pseudo Genes (total)::192
CDSs (without protein)::192
Pseudo Genes (ambiguous residues)::0 of 192
Pseudo Genes (frameshifted)::115 of 192
Pseudo Genes (incomplete)::76 of 192
Pseudo Genes (internal stop)::48 of 192
Pseudo Genes (multiple problems)::43 of 192
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,163,684
Total ungapped length2,163,684
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015709195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP045590.1=NZ_CP045590.1
Plasmid p.J7A.1CP045591.1=NZ_CP045591.1
Plasmid p.J7A.2CP045592.1=NZ_CP045592.1

Assembly statistics

MoleculeTotal
Length
All2,163,684
Chromosome 2,133,360
Plasmid p.J7A.123,910
Plasmid p.J7A.26,414

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus helveticusLactobacillus helveticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015698225.1Lactobacillus helveticustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015698225.1Lactobacillus helveticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3474.9476.58
Best-match type98.3474.9476.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna