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ASM1573230v1

Organism name:
Pectinatus frisingensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MB240
BioSample:
SAMN12831177
BioProject:
PRJNA573921
Submitter:
Genedata
Date:
2020/12/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015732305.1 (latest)
RefSeq assembly accession:
GCF_015732305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WIQR01
Assembly method:
Canu v. 1.4
Expected final version:
yes
Genome coverage:
772x
Sequencing technology:
PacBio Sequel

IDs: 8672371 [UID] 23516038 [GenBank] 23557808 [RefSeq]

See Genome Information for Pectinatus frisingensis

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,342,728
Total ungapped length3,342,728
Number of contigs22
Contig N50283,362
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,342,728223,342,728283,36200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pectinatus frisingensisPectinatus frisingensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015732285.1Pectinatus frisingensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015732285.1Pectinatus frisingensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8171.9582.35
Best-match type97.8171.9582.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna