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ASM1590888v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: YZDH1
BioSample:
SAMN16966886
BioProject:
PRJNA681726
Submitter:
Nanjing Agricultural University
Date:
2020/12/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015908885.1 (latest)
RefSeq assembly accession:
GCF_015908885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 2.1.5; canu v. 2.1.1
Expected final version:
yes
Genome coverage:
1000.0x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore

IDs: 8758791 [UID] 23735578 [GenBank] 23792478 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 03:11:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,409
CDSs (total)::2,335
Genes (coding)::2,228
CDSs (with protein)::2,228
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::107
CDSs (without protein)::107
Pseudo Genes (ambiguous residues)::0 of 107
Pseudo Genes (frameshifted)::47 of 107
Pseudo Genes (incomplete)::50 of 107
Pseudo Genes (internal stop)::34 of 107
Pseudo Genes (multiple problems)::23 of 107
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,495,947
Total ungapped length2,495,947
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015908895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP065430.1=NZ_CP065430.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,495,947

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9563.1079.36
Best-match type94.9563.1079.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna