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ASM1665351v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: KF7
BioSample:
SAMN17214539
BioProject:
PRJNA689681
Submitter:
Technology Center of Bright Dairy & Food Co., Ltd,China
Date:
2021/01/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016653515.1 (latest)
RefSeq assembly accession:
GCF_016653515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4; Canu v. 1.4
Expected final version:
yes
Genome coverage:
354.0x
Sequencing technology:
PacBio

IDs: 9135311 [UID] 24595228 [GenBank] 24641798 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 635 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/30/2024 09:52:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,081
CDSs (total)::3,003
Genes (coding)::2,901
CDSs (with protein)::2,901
Genes (RNA)::78
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::102
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::29 of 102
Pseudo Genes (incomplete)::64 of 102
Pseudo Genes (internal stop)::21 of 102
Pseudo Genes (multiple problems)::11 of 102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,251,532
Total ungapped length3,251,532
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016653525.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP067365.1=NZ_CP067365.1
Plasmid p1CP067366.1=NZ_CP067366.1
Plasmid p2CP067367.1=NZ_CP067367.1
Plasmid p3CP067368.1=NZ_CP067368.1

Assembly statistics

MoleculeTotal
Length
All3,251,532
Chromosome 3,172,945
Plasmid p163,181
Plasmid p29,203
Plasmid p36,203

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2088.3896.16
Best-match type99.2088.3896.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna