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ASM1690700v1

Organism name:
Methanococcus maripaludis (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: RC
BioSample:
SAMN17620118
BioProject:
PRJNA632148
Submitter:
DOE Joint Genome Institute
Date:
2021/02/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_016907005.1 (latest)
RefSeq assembly accession:
GCF_016907005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFBBC01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
865.0x
Sequencing technology:
Illumina

IDs: 9299001 [UID] 25036278 [GenBank] 25069598 [RefSeq]

See Genome Information for Methanococcus maripaludis

There are 29 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,733,994
Total ungapped length1,733,513
Gaps between scaffolds0
Number of scaffolds4
Scaffold N501,337,907
Scaffold L501
Number of contigs9
Contig N50379,086
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,733,99441,733,5131,337,90750

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludisMethanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9698.86
Best-match type99.9999.9698.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna