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ASM1730940v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SC183
BioSample:
SAMN18091836
BioProject:
PRJNA705548
Submitter:
Henan Agricultural University
Date:
2021/03/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_017309405.1 (latest)
RefSeq assembly accession:
GCF_017309405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
A5-miseeq v. v20150522; CANU v. v1.4
Expected final version:
yes
Genome coverage:
432.0x
Sequencing technology:
Illumina MiSeq; PacBio

IDs: 9503041 [UID] 25493298 [GenBank] 25539468 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_017309405.1-RS_2024_04_21
Annotation Date::04/21/2024 03:57:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,311
CDSs (total)::2,239
Genes (coding)::2,119
CDSs (with protein)::2,119
Genes (RNA)::72
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::120
CDSs (without protein)::120
Pseudo Genes (ambiguous residues)::0 of 120
Pseudo Genes (frameshifted)::82 of 120
Pseudo Genes (incomplete)::39 of 120
Pseudo Genes (internal stop)::18 of 120
Pseudo Genes (multiple problems)::17 of 120
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,328,375
Total ungapped length2,328,375
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017309415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP071305.1=NZ_CP071305.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,328,375

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2572.7985.41
Best-match type96.2572.7985.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna