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ASM1774275v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AU2011
BioSample:
SAMN18299381
BioProject:
PRJNA714294
Submitter:
Adeleke University
Date:
2021/04/04
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_017742755.1 (latest)
RefSeq assembly accession:
GCF_017742755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SKESA v. v2.3.0
Expected final version:
yes
Genome coverage:
14.8x
Sequencing technology:
Illumina MiSeq

IDs: 9730851 [UID] 26005508 [GenBank] 26063708 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

Pathogen Detection Resources

There are 213 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Prof. Oyawoye Olubukola. Dept. of Microbiology, Adeleke University, Ede, Nigeria
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_017742755.1-RS_2024_03_30
Annotation Date::03/30/2024 06:18:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,255
CDSs (total)::6,193
Genes (coding)::6,012
CDSs (with protein)::6,012
Genes (RNA)::62
rRNAs::4 (5S)
complete rRNAs::4 (5S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::181
CDSs (without protein)::181
Pseudo Genes (ambiguous residues)::0 of 181
Pseudo Genes (frameshifted)::41 of 181
Pseudo Genes (incomplete)::165 of 181
Pseudo Genes (internal stop)::9 of 181
Pseudo Genes (multiple problems)::31 of 181
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,044,761
Total ungapped length6,712,776
Gaps between scaffolds0
Number of scaffolds4
Scaffold N502,341,920
Scaffold L502
Number of contigs316
Contig N5043,821
Contig L5050
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017742765.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP072318.1=NZ_CP072318.1
Chromosome 2CP072320.1=NZ_CP072320.1
Chromosome 3CP072321.1=NZ_CP072321.1
Plasmid unnamed1CP072319.1=NZ_CP072319.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All7,044,76146,712,7762,341,9203120
Chromosome 13,233,25313,120,4833,233,2531700
Chromosome 22,341,92012,292,5672,341,920800
Chromosome 31,335,48211,216,1341,335,482610
Plasmid unnamed1134,106183,592134,10610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0891.3988.52
Best-match type99.0891.3988.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna