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ASM1789434v1

Organism name:
Lactobacillus taiwanensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CLG01
BioSample:
SAMN15573980
BioProject:
PRJNA645781
Submitter:
China,Shandong University,Cheloo College of Medicine,Qilu Hospital
Date:
2021/04/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017894345.1 (latest)
RefSeq assembly accession:
GCF_017894345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 2.0.3
Expected final version:
yes
Genome coverage:
1000.0x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore

IDs: 9806081 [UID] 26171248 [GenBank] 26185588 [RefSeq]

See Genome Information for Lactobacillus taiwanensis

Pathogen Detection Resources

There are 92 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Laboratory of Translational Gastroenterology,Qilu Hospital,Cheloo College of Medicine,Shandong University,Jinan,Shandong,China

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_017894345.1-RS_2024_03_28
Annotation Date::03/28/2024 07:06:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,034
CDSs (total)::1,933
Genes (coding)::1,838
CDSs (with protein)::1,838
Genes (RNA)::101
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::77
ncRNAs::3
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::57 of 95
Pseudo Genes (incomplete)::52 of 95
Pseudo Genes (internal stop)::39 of 95
Pseudo Genes (multiple problems)::43 of 95
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,041,763
Total ungapped length2,041,763
Total number of chromosomes and plasmids3

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017894355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP059276.1=NZ_CP059276.1
Plasmid unnamed1CP059277.1=NZ_CP059277.1
Plasmid unnamed2CP059278.1=NZ_CP059278.1

Assembly statistics

MoleculeTotal
Length
All2,041,763
Chromosome 1,893,948
Plasmid unnamed1137,288
Plasmid unnamed210,527

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus taiwanensisLactobacillus taiwanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001436695.1Lactobacillus taiwanensis DSM 21401type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001436695.1Lactobacillus taiwanensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4883.8391.39
Best-match type98.4883.8391.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna