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ASM1904818v1

Organism name:
Lelliottia amnigena (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS 1446
BioSample:
SAMN16357588
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/06/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_019048185.1 (latest)
RefSeq assembly accession:
GCF_019048185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1
Genome coverage:
1912.36x
Sequencing technology:
Pacbio; Illumina

IDs: 10391921 [UID] 27594908 [GenBank] 27603518 [RefSeq]

See Genome Information for Lelliottia amnigena

Pathogen Detection Resources

There are 33 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/21/2023 04:31:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,801
CDSs (total)::4,681
Genes (coding)::4,487
CDSs (with protein)::4,487
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::12
Pseudo Genes (total)::194
CDSs (without protein)::194
Pseudo Genes (ambiguous residues)::0 of 194
Pseudo Genes (frameshifted)::110 of 194
Pseudo Genes (incomplete)::81 of 194
Pseudo Genes (internal stop)::41 of 194
Pseudo Genes (multiple problems)::32 of 194
Pseudo Genes (short protein)::1 of 194
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,914,411
Total ungapped length4,914,411
Total number of chromosomes and plasmids5

Supplemental Content

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_019048195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP077331.1=NZ_CP077331.1
Plasmid unnamed1CP077332.1=NZ_CP077332.1
Plasmid unnamed2CP077333.1=NZ_CP077333.1
Plasmid unnamed3CP077334.1=NZ_CP077334.1
Plasmid unnamed4CP077335.1=NZ_CP077335.1

Assembly statistics

MoleculeTotal
Length
All4,914,411
Chromosome 4,591,698
Plasmid unnamed1157,312
Plasmid unnamed2123,770
Plasmid unnamed339,340
Plasmid unnamed42,291

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lelliottia amnigenaLelliottia amnigena

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047465.1Lelliottia amnigenatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047465.1Lelliottia amnigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4983.2690.81
Best-match type98.4983.2690.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna