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ASM2009935v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1488
BioSample:
SAMN21218844
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/09/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020099355.1 (latest)
RefSeq assembly accession:
GCF_020099355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
949.79x
Sequencing technology:
Pacbio; Illumina

IDs: 10971541 [UID] 28994398 [GenBank] 29106958 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

There are 213 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_020099355.1-RS_2024_03_30
Annotation Date::03/30/2024 06:38:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,286
CDSs (total)::6,193
Genes (coding)::6,053
CDSs (with protein)::6,053
Genes (RNA)::93
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::71
ncRNAs::4
Pseudo Genes (total)::140
CDSs (without protein)::140
Pseudo Genes (ambiguous residues)::0 of 140
Pseudo Genes (frameshifted)::40 of 140
Pseudo Genes (incomplete)::118 of 140
Pseudo Genes (internal stop)::15 of 140
Pseudo Genes (multiple problems)::31 of 140
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,930,499
Total ungapped length6,930,499
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020099365.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP083654.1=NZ_CP083654.1
Chromosome 2CP083655.1=NZ_CP083655.1
Chromosome 3CP083656.1=NZ_CP083656.1
Plasmid unnamedCP083657.1=NZ_CP083657.1

Assembly statistics

MoleculeTotal
Length
All6,930,499
Chromosome 12,262,096
Chromosome 23,317,416
Chromosome 31,248,367
Plasmid unnamed102,620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000959445.1Burkholderia vietnamiensis LMG 10929type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000959445.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna