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ASM2073642v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1590
BioSample:
SAMN22365119
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/11/03
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020736425.1 (latest)
RefSeq assembly accession:
GCF_020736425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
682.86x
Sequencing technology:
Pacbio; Illumina

IDs: 11375061 [UID] 29944118 [GenBank] 29955578 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

Pathogen Detection Resources

There are 213 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/23/2023 21:06:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,126
CDSs (total)::7,036
Genes (coding)::6,883
CDSs (with protein)::6,883
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::153
CDSs (without protein)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::34 of 153
Pseudo Genes (incomplete)::137 of 153
Pseudo Genes (internal stop)::10 of 153
Pseudo Genes (multiple problems)::25 of 153
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,699,072
Total ungapped length7,699,062
Gaps between scaffolds0
Number of scaffolds5
Scaffold N502,307,104
Scaffold L502
Number of contigs5
Contig N502,307,094
Contig L502
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)5

Supplemental Content

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020736435.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP085996.1=NZ_CP085996.1
Chromosome 2CP085997.1=NZ_CP085997.1
Chromosome 3CP085995.1=NZ_CP085995.1
Plasmid unnamed1CP085998.1=NZ_CP085998.1
Plasmid unnamed2CP085999.1=NZ_CP085999.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All7,699,07257,699,0622,307,10410
Chromosome 13,756,85813,756,8583,756,85800
Chromosome 22,307,10412,307,0942,307,10410
Chromosome 31,226,40611,226,4061,226,40600
Plasmid unnamed1213,7091213,709213,70900
Plasmid unnamed2194,9951194,995194,99500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0580.3389.24
Best-match type99.0580.3389.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna