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ASM2078325v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 196
BioSample:
SAMN22567594
BioProject:
PRJNA774541
Submitter:
JMI Laboratories
Date:
2021/11/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_020783255.1 (latest)
RefSeq assembly accession:
GCF_020783255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.9b
Expected final version:
yes
Genome coverage:
37.64x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 11399071 [UID] 29999438 [GenBank] 30028228 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/05/2024 13:15:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,545
CDSs (total)::4,430
Genes (coding)::4,388
CDSs (with protein)::4,388
Genes (RNA)::115
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::7
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::21 of 42
Pseudo Genes (incomplete)::21 of 42
Pseudo Genes (internal stop)::14 of 42
Pseudo Genes (multiple problems)::13 of 42
Pseudo Genes (short protein)::1 of 42
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,763,238
Total ungapped length4,763,238
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020783265.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP086100.1=NZ_CP086100.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,763,238

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0094.3490.90
Best-match type99.0094.3490.90

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna