U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2101878v1

Organism name:
Bifidobacterium animalis subsp. lactis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15954
BioSample:
SAMN22442594
BioProject:
PRJNA773092
Submitter:
IFF Health & Biosciences
Date:
2021/12/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_021018785.1 (latest)
RefSeq assembly accession:
GCF_021018785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicyler v. 2018
Expected final version:
yes
Genome coverage:
218.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore GridION

IDs: 11531581 [UID] 30364408 [GenBank] 30383358 [RefSeq]

See Genome Information for Bifidobacterium animalis

There are 237 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Leibniz Institute DSMZ
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/02/2024 04:20:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,623
CDSs (total)::1,556
Genes (coding)::1,542
CDSs (with protein)::1,542
Genes (RNA)::67
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::5 of 14
Pseudo Genes (incomplete)::9 of 14
Pseudo Genes (internal stop)::1 of 14
Pseudo Genes (multiple problems)::1 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,944,152
Total ungapped length1,944,152
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021018795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP085838.1=NZ_CP085838.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,944,152

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium animalis subsp. lactisBifidobacterium animalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000022965.1Bifidobacterium animalis subsp. lactis DSM 10140type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022965.1Bifidobacterium animalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.71100.00
Best-match type99.9999.71100.00

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna