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ASM2148494v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CMCC(B)23005
BioSample:
SAMN24665687
BioProject:
PRJNA794967
Submitter:
chemical drug testing
Date:
2022/01/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_021484945.1 (latest)
RefSeq assembly accession:
GCF_021484945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. v1.5
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
Oxford Nanopore; DNBSEQ

IDs: 11766011 [UID] 30970898 [GenBank] 30983778 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/08/2023 12:13:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,019
CDSs (total)::7,925
Genes (coding)::7,759
CDSs (with protein)::7,759
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::87 of 166
Pseudo Genes (incomplete)::107 of 166
Pseudo Genes (internal stop)::12 of 166
Pseudo Genes (multiple problems)::35 of 166
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,636,651
Total ungapped length8,636,651
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021484955.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP090608.1=NZ_CP090608.1
Chromosome 2CP090609.1=NZ_CP090609.1
Chromosome 3CP090610.1=NZ_CP090610.1

Assembly statistics

MoleculeTotal
Length
All8,636,651
Chromosome 13,739,938
Chromosome 23,474,201
Chromosome 31,422,512

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7288.8389.15
Best-match type98.7288.8389.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna