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ASM2202435v1

Organism name:
Streptococcus thermophilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CS20
BioSample:
SAMN09487225
BioProject:
PRJNA477906
Submitter:
Huazhong University of Science and Technology
Date:
2022/02/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_022024355.1 (latest)
RefSeq assembly accession:
GCF_022024355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 2.0.2
Expected final version:
yes
Genome coverage:
1000.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 11985861 [UID] 31590478 [GenBank] 31737448 [RefSeq]

See Genome Information for Streptococcus thermophilus

There are 565 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/06/2024 04:22:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,003
CDSs (total)::1,948
Genes (coding)::1,693
CDSs (with protein)::1,693
Genes (RNA)::55
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::255
CDSs (without protein)::255
Pseudo Genes (ambiguous residues)::0 of 255
Pseudo Genes (frameshifted)::170 of 255
Pseudo Genes (incomplete)::98 of 255
Pseudo Genes (internal stop)::97 of 255
Pseudo Genes (multiple problems)::97 of 255
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,936,216
Total ungapped length1,936,216
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022024365.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP030250.1=NZ_CP030250.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,936,216

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus thermophilusStreptococcus thermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010120595.1Streptococcus thermophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010120595.1Streptococcus thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7186.9580.08
Best-match type98.7186.9580.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna