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ASM2221344v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_721
BioSample:
SAMN11056436
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2022/02/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_022213445.1 (latest)
RefSeq assembly accession:
GCF_022213445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.4
Genome coverage:
357.99x
Sequencing technology:
Pacbio; Illumina

IDs: 12133391 [UID] 31797078 [GenBank] 31808198 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

Pathogen Detection Resources

There are 213 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 04:29:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,386
CDSs (total)::6,298
Genes (coding)::6,187
CDSs (with protein)::6,187
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::111
CDSs (without protein)::111
Pseudo Genes (ambiguous residues)::0 of 111
Pseudo Genes (frameshifted)::50 of 111
Pseudo Genes (incomplete)::82 of 111
Pseudo Genes (internal stop)::14 of 111
Pseudo Genes (multiple problems)::31 of 111
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,018,556
Total ungapped length7,018,556
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022213455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP091983.1=NZ_CP091983.1
Chromosome 2CP091984.1=NZ_CP091984.1
Chromosome 3CP091985.1=NZ_CP091985.1
Plasmid unnamedCP091982.1=NZ_CP091982.1

Assembly statistics

MoleculeTotal
Length
All7,018,556
Chromosome 12,300,155
Chromosome 21,090,554
Chromosome 33,402,659
Plasmid unnamed225,188

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0188.1489.26
Best-match type99.0188.1489.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna