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ASM2270133v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: KZ0310
BioSample:
SAMN12671284
BioProject:
PRJNA563286
Submitter:
Southwest University
Date:
2022/03/28
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_022701335.1 (latest)
RefSeq assembly accession:
GCF_022701335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2.3 OR MAY-2011
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore MiniION

IDs: 12386651 [UID] 32447548 [GenBank] 32511948 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

Pathogen Detection Resources

There are 102 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_022701335.1-RS_2024_04_10
Annotation Date::04/10/2024 23:13:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,554
CDSs (total)::3,462
Genes (coding)::3,391
CDSs (with protein)::3,391
Genes (RNA)::92
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::73
ncRNAs::3
Pseudo Genes (total)::72
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::25 of 72
Pseudo Genes (incomplete)::38 of 72
Pseudo Genes (internal stop)::18 of 72
Pseudo Genes (multiple problems)::9 of 72
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,873,381
Total ungapped length3,873,281
Gaps between scaffolds0
Number of scaffolds10
Scaffold N503,581,137
Scaffold L501
Number of contigs10
Contig N503,581,037
Contig L501
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)10

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022701345.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP044245.1=NZ_CP044245.1
Plasmid pKZ1CP044246.1=NZ_CP044246.1
Plasmid pKZ2CP044247.1=NZ_CP044247.1
Plasmid pKZ3CP044248.1=NZ_CP044248.1
Plasmid pKZ4CP044249.1=NZ_CP044249.1
Plasmid pKZ5CP044250.1=NZ_CP044250.1
Plasmid pKZ6CP044251.1=NZ_CP044251.1
Plasmid pKZ7CP044252.1=NZ_CP044252.1
Plasmid pKZ8CP044253.1=NZ_CP044253.1
Plasmid pKZ9CP044254.1=NZ_CP044254.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,873,381103,873,2813,581,13710
Chromosome 3,581,13713,581,0373,581,13710
Plasmid pKZ177,271177,27177,27100
Plasmid pKZ249,857149,85749,85700
Plasmid pKZ346,922146,92246,92200
Plasmid pKZ440,319140,31940,31900
Plasmid pKZ537,341137,34137,34100
Plasmid pKZ619,531119,53119,53100
Plasmid pKZ79,64919,6499,64900
Plasmid pKZ87,82617,8267,82600
Plasmid pKZ93,52813,5283,52800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003641185.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003641185.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8091.3696.38
Best-match type99.8091.3696.38

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna