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ASM2281066v1

Organism name:
Lactobacillus johnsonii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 7409N31
BioSample:
SAMN21619988
BioProject:
PRJNA766157
Submitter:
World Institute of Kimchi
Date:
2022/04/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_022810665.1 (latest)
RefSeq assembly accession:
GCF_022810665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
1886.5x
Sequencing technology:
PacBio RSII

IDs: 12443451 [UID] 32583678 [GenBank] 32594758 [RefSeq]

See Genome Information for Lactobacillus johnsonii

There are 963 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_022810665.1-RS_2024_05_18
Annotation Date::05/18/2024 03:38:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,260
CDSs (total)::2,110
Genes (coding)::2,023
CDSs (with protein)::2,023
Genes (RNA)::150
rRNAs::12, 12, 12 (5S, 16S, 23S)
complete rRNAs::12, 12, 12 (5S, 16S, 23S)
tRNAs::111
ncRNAs::3
Pseudo Genes (total)::87
CDSs (without protein)::87
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::43 of 87
Pseudo Genes (incomplete)::34 of 87
Pseudo Genes (internal stop)::34 of 87
Pseudo Genes (multiple problems)::22 of 87
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,198,442
Total ungapped length2,198,442
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022810675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP084221.1=NZ_CP084221.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,198,442

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus johnsoniiLactobacillus johnsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000159355.1Lactobacillus johnsonii ATCC 33200type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000159355.1Lactobacillus johnsoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9270.2587.11
Best-match type96.9270.2587.11

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna