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ASM2296495v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TJS75
BioSample:
SAMN27363618
BioProject:
PRJNA823868
Submitter:
Tianjin Academy of Agricultural Sciences
Date:
2022/04/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_022964955.1 (latest)
RefSeq assembly accession:
GCF_022964955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.5
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 12517231 [UID] 32755628 [GenBank] 32805388 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Laboratory of Animal Husbandry and Veterinary Research Institute, Tianjin Academy of Agricultural Sciences
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/29/2023 04:43:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,353
CDSs (total)::2,280
Genes (coding)::2,196
CDSs (with protein)::2,196
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::84
CDSs (without protein)::84
Pseudo Genes (ambiguous residues)::0 of 84
Pseudo Genes (frameshifted)::40 of 84
Pseudo Genes (incomplete)::40 of 84
Pseudo Genes (internal stop)::21 of 84
Pseudo Genes (multiple problems)::13 of 84
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,368,195
Total ungapped length2,368,195
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022964965.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP095162.1=NZ_CP095162.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,368,195

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0374.7289.18
Best-match type97.0374.7289.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna