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ASM2305351v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BRDJ
BioSample:
SAMN27545478
BioProject:
PRJNA825821
Submitter:
Jiangxi Academy of Agriculture Science
Date:
2022/04/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023053515.1 (latest)
RefSeq assembly accession:
GCF_023053515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. v5.0.1
Expected final version:
yes
Genome coverage:
189.0x
Sequencing technology:
PacBio

IDs: 12563331 [UID] 32852938 [GenBank] 32899538 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from renliang huang Nanchang Subcenter of National Research Center for Rice Engineering, Key Laboratory of Rice Physiology and Genetics of Jiangxi Province, Rice Research Institute, Jiangxi Academy of Agriculture Science, Nanchang, 330200, China
The annotation ... was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/09/2023 04:25:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,082
CDSs (total)::7,991
Genes (coding)::7,875
CDSs (with protein)::7,875
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::116
CDSs (without protein)::116
Pseudo Genes (ambiguous residues)::0 of 116
Pseudo Genes (frameshifted)::51 of 116
Pseudo Genes (incomplete)::90 of 116
Pseudo Genes (internal stop)::11 of 116
Pseudo Genes (multiple problems)::31 of 116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,745,840
Total ungapped length8,745,840
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023053525.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP095496.1=NZ_CP095496.1
Chromosome 2CP095497.1=NZ_CP095497.1
Chromosome 3CP095498.1=NZ_CP095498.1

Assembly statistics

MoleculeTotal
Length
All8,745,840
Chromosome 11,397,783
Chromosome 23,539,936
Chromosome 33,808,121

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094315.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094315.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7086.7288.45
Best-match type98.7086.7288.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna