U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2327865v1

Organism name:
Bifidobacterium animalis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YL2
BioSample:
SAMN27755658
BioProject:
PRJNA831628
Submitter:
Institut Pasteur
Date:
2022/05/09
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_023278655.1 (latest)
RefSeq assembly accession:
GCF_023278655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. Fev-2021
Expected final version:
yes
Genome coverage:
12x
Sequencing technology:
Illumina NextSeq

IDs: 12678801 [UID] 33166308 [GenBank] 33235158 [RefSeq]

See Genome Information for Bifidobacterium animalis

There are 237 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/19/2023 04:00:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,678
CDSs (total)::1,614
Genes (coding)::1,594
CDSs (with protein)::1,594
Genes (RNA)::64
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::7 of 20
Pseudo Genes (incomplete)::10 of 20
Pseudo Genes (internal stop)::8 of 20
Pseudo Genes (multiple problems)::5 of 20
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,022,126
Total ungapped length2,021,926
Gaps between scaffolds0
Number of scaffolds1
Scaffold N502,022,126
Scaffold L501
Number of contigs3
Contig N50650,170
Contig L502
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023278665.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP097000.1=NZ_CP097000.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 2,022,12612,021,9262,022,12620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium animalisBifidobacterium animalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000260715.1Bifidobacterium animalis subsp. animalis ATCC 25527type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000260715.1Bifidobacterium animalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9789.0993.20
Best-match type98.9789.0993.20

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna