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ASM2337447v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2017Y70952565VI
BioSample:
SAMN20348603
BioProject:
PRJNA748922
Submitter:
University Hospital Muenster
Date:
2022/05/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023374475.1 (latest)
RefSeq assembly accession:
GCF_023374475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. SMRT Link V9
Expected final version:
yes
Genome coverage:
102x
Sequencing technology:
PacBio Sequel

IDs: 12725401 [UID] 33282668 [GenBank] 33409358 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/02/2023 01:29:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,772
CDSs (total)::7,681
Genes (coding)::7,539
CDSs (with protein)::7,539
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::60 of 142
Pseudo Genes (incomplete)::101 of 142
Pseudo Genes (internal stop)::11 of 142
Pseudo Genes (multiple problems)::27 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,499,470
Total ungapped length8,499,470
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023374485.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP090698.1=NZ_CP090698.1
Chromosome 2CP090699.1=NZ_CP090699.1

Assembly statistics

MoleculeTotal
Length
All8,499,470
Chromosome 13,501,858
Chromosome 24,997,612

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094315.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094315.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5286.0685.31
Best-match type97.5286.0685.31

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna